Soon

hub

• 🚸 De-duplicate versions in the card boxes of the Overview page PR @falexwolf

• ✨ Group ulabels by type PR @awgaan

• 🐛 Fix display of dropdown behind Schema filter button on Artifacts page PR @falexwolf

• 💄 Display transform keys PR @sunnyosun

• 💄 Create a more intuitive artifact page PR @chaichontat

• Allow editing of transform name and attaching/detaching labels PR @awgaan

• ✨ Dynamic code copy for R and Python PR @chaichontat

• 🚸 Improve speed and relevance of search PR @falexwolf

• v0.31.0 PR @chaichontat

db

• ♻️ Small corrections PR @Koncopd

• ✨ Allow to use Artifact.open() and Artifact.load() for .gz files PR @Koncopd

• 💚 Fix CI PR @Koncopd

• ✨ Extend schema json PR @fredericenard

• 🚸 Raise consistency error if a source path suffix doesn’t match the artifact key suffix PR @falexwolf

• 💚 Fix prettier pre-commit hook PR @Koncopd

• 💚 Fix prettier pre-commit hook PR @Koncopd

• ⬆️ Update submodules PR @sunnyosun

• 🐛 Fix .add_new_from message PR @Zethson

• 🐛 Run pip freeze with current python interpreter PR @ap–

• ⬆️ Upgrade bionty PR @Zethson

• fix typo PR @Zethson

• 🐛 Do not resolve http links when registering PR @Koncopd

• 🐛 Fix notebook re-run with same hash PR @falexwolf

• ♻️ Exclude DoesNotExist in private-django-api PR @falexwolf

• 📝 Add endpoint_url option to docs PR @Koncopd

• 🐛 Automatically add missing columns upon .standardize() if nullable is True PR @falexwolf

• ✨ Allow to specify fsspec upload options in Artifact.save PR @Koncopd

• ✨ Write Artifact.n_observations in Artifact.from_df() PR @Koncopd

• 🐛 Fix related model field check in .filter PR @Koncopd

• 💚 Fix docs build PR @falexwolf

usecases

• 📝 Add PertCurator notebook back PR @falexwolf

• 💚 Prettify and fix PR @falexwolf

• ✨ Add finished_at PR @Zethson

• 🚚 Move PertCurator into lamindb PR @falexwolf

• 🚚 Rename artifact.biosamples to artifact.clinicore_biosamples PR @sunnyosun

• ♻️ Squash migrations PR @falexwolf

• ✨ Upgrade ruff and pre-commit config PR @Zethson

• ⏪️ Revert donor to ULabel PR @sunnyosun

• 💚 Map feature donor_id to Donor.name PR @sunnyosun

• 🎨 Sort curated columns in PertCurator PR @sunnyosun

• 🎨 Remove lnschema-core PR @Zethson

• 💚 Fix PR @falexwolf

• 🎨 Make sure pert_ column categories are consistent PR @sunnyosun

• 🚚 Deprecate the --schema argument of lamin init in favor of --modules PR @falexwolf

• ⬆️ Upgrade to lamindb 1.0a1 PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• 🐛 Fix default values PR @Zethson

• ✅ Fail CI if cellxgene-schema CLI validation fails PR @Zethson

• 🎨 Set up sources dynamically PR @sunnyosun

• 🎨 Do not check embedding in .validate PR @sunnyosun

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf

• ⬆️ Unpin tiledbsoma in CI PR @Koncopd

• ✨ PertCurator PR @sunnyosun

• ⬆️ Fix import PR @sunnyosun

• 🐛 Fix docs & import PR @falexwolf

• 🍱 Create the Biologic registry PR @falexwolf

• 📝 Fix pert nb PR @sunnyosun

• 🎨 Fix model relationships PR @sunnyosun

• ✨ Rename Treatment to Perturbation, add Donor registry, improve GeneticPerturbationSystem typing PR @Zethson

• 🎨 Fix link tables of Biosample and Techsample PR @sunnyosun

• 💚 Fix for 0.77.1 PR @falexwolf

• 🎨 Fix cellxgene-schema CLI PR @Zethson

• 📝 Edit search queries for public ontologies PR @Koncopd

• 🐛 Fix cell type curation PR @Zethson

• 📝 Adapt usecases to the new search PR @Koncopd

• ✨ Add script to add references to existing corpus PR @Zethson

• ✨ Add Person and Reference models PR @Zethson

• fix typo PR @Zethson

• 🎨 Re-create 1st migration PR @sunnyosun

• 🎨 Clean up PR @sunnyosun

• ⬆️ Clean up PR @sunnyosun

• 🎨 Clean up PR @sunnyosun

• ⬆️ Update lamindb PR @sunnyosun

• ⬆️ Update lamindb deps PR @sunnyosun

• 💚 Fix literal PR @sunnyosun

bionty

• 🎨 Improve from_source docstrings for entities PR @falexwolf

• ♻️ Resquash migrations PR @falexwolf

• ♻️ Add data migration for source uids PR @falexwolf

• 🍱 Adjust migration to 8-char Source uid PR @falexwolf

• ♻️ Increase uid length for Source to 8 chars PR @falexwolf

• ♻️ Point to new squashed migration PR @falexwolf

• ♻️ Reconfigure migrations PR @falexwolf

• 🎨 Improve from_source docstrings for entities PR @Zethson

• ♻️ Squash migrations PR @falexwolf

• ♻️ Port simplified deprecation strategy PR @falexwolf

• ♻️ Create backward accessors on SchemaFeature link models PR @falexwolf

• 🚚 Rename FeatureSet to Schema and migrate to lamindb 1.0a5 PR @falexwolf

• 🚚 Deprecate the --schema argument of lamin init in favor of --modules PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• ✨ Upgrade Ruff and mypy PR @Zethson

• 🍱 New CellType version: cl-2024-08-16 PR @Zethson

• 🍱 New Disease version: mondo-2024-08-06 PR @Zethson

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf